assignStates: assignStates()
In akdess/CaSpER: Identify large-scale CNV events from single cell or bulk RNA-Seq data
Description
Usage
Arguments
Value
Description
calculates baf shift threshold using gaussian mixture models and assigns deletion or amplification to a segment when the HMM state is 1 or 5 without looking at the BAF signal. When the segment state is 2 or 4, an accompanying BAF shift on the segment is required.
Usage
1
assignStates(object)
Arguments
object
casper object
Value
object
akdess/CaSpER documentation built on April 8, 2021, 8:59 a.m.
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Description Usage Arguments Value
Description
calculates baf shift threshold using gaussian mixture models and assigns deletion or amplification to a segment when the HMM state is 1 or 5 without looking at the BAF signal. When the segment state is 2 or 4, an accompanying BAF shift on the segment is required.
Usage
1 | assignStates(object)
|
Arguments
object |
casper object |
Value
object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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