generateAnnotation: generateAnnotation()
In akdess/CaSpER: Identify large-scale CNV events from single cell or bulk RNA-Seq data
Description
Usage
Arguments
Value
View source: R/utility_functions.R
Description
retrieves gene chromosomal locations from biomart
Usage
1
2
generateAnnotation(id_type = "ensembl_gene_id", genes, ishg19,
centromere)
Arguments
id_type
gene list identifier, ensembl_gene_id or hgnc_symbol
genes
list of genes
ishg19
boolean values determining the genome version
centromere
centromer regions
Value
list of mutually exclusive and co-occurent events
akdess/CaSpER documentation built on April 8, 2021, 8:59 a.m.
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Description Usage Arguments Value
View source: R/utility_functions.R
Description
retrieves gene chromosomal locations from biomart
Usage
1 2 | generateAnnotation(id_type = "ensembl_gene_id", genes, ishg19,
centromere)
|
Arguments
id_type |
gene list identifier, ensembl_gene_id or hgnc_symbol |
genes |
list of genes |
ishg19 |
boolean values determining the genome version |
centromere |
centromer regions |
Value
list of mutually exclusive and co-occurent events
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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