View source: R/haystack_clustering.R
kmeans_haystack_raw | R Documentation |
Function for k-means clustering of genes according to their distribution on a 2D plot.
kmeans_haystack_raw(x, y, detection, genes, k, ...)
x |
x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE) |
y |
y-axis coordinates of cells in a 2D representation |
detection |
A logical matrix showing which genes (rows) are detected in which cells (columns) |
genes |
A set of genes (of the 'detection' data) which will be clustered. |
k |
The number of clusters to return. |
... |
Additional parameters which will be passed on to the kmeans function. |
An object of class kmeans, describing a clustering into 'k' clusters
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