View source: R/haystack_visualization.R
plot_gene_set_haystack_raw | R Documentation |
Visualizing the detection/expression of a set of genes in a 2D plot
plot_gene_set_haystack_raw(
x,
y,
genes = NA,
detection,
high.resolution = TRUE,
point.size = 1,
order.by.signal = FALSE
)
x |
x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE) |
y |
y-axis coordinates of cells in a 2D representation |
genes |
Gene names that are present in the input expression data, or a numerical indeces. If NA, all genes will be used. |
detection |
a logical matrix showing detection of genes (rows) in cells (columns) |
high.resolution |
logical (default: TRUE). If set to FALSE, the density plot will be of a lower resolution |
point.size |
numerical value to set size of points in plot. Default is 1. |
order.by.signal |
If TRUE, cells with higher signal will be put on the foreground in the plot. Default is FALSE. |
A plot
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