plot_rand_KLD: plot_rand_KLD

In alexisvdb/singleCellHaystack: A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data

plot_rand_KLD

Description

Plots the distribution of randomized KLD for each of the genes, together with the mean and standard deviation, the 0.95 quantile and the 0.95 quantile from a normal distribution with mean and standard deviations from the distribution of KLDs. The logCV is indicated in the subtitle of each plot.

Usage

plot_rand_KLD(x, n = 12, log = TRUE, tail = FALSE)

Arguments

x	haystack result.
n	number of genes from randomization set to plot.
log	whether to use log of KLD.
tail	whether the genes are chosen from the tail of randomized genes.

alexisvdb/singleCellHaystack documentation built on Jan. 17, 2024, 10:45 a.m.