plot_gene_set_haystack | R Documentation |
Visualizing the detection/expression of a set of genes in a 2D plot
plot_gene_set_haystack(x, ...)
## S3 method for class 'matrix'
plot_gene_set_haystack(x, dim1 = 1, dim2 = 2, ...)
## S3 method for class 'data.frame'
plot_gene_set_haystack(x, dim1 = 1, dim2 = 2, ...)
## S3 method for class 'SingleCellExperiment'
plot_gene_set_haystack(
x,
dim1 = 1,
dim2 = 2,
assay = "counts",
coord = "TSNE",
...
)
## S3 method for class 'Seurat'
plot_gene_set_haystack(
x,
dim1 = 1,
dim2 = 2,
assay = "RNA",
slot = "data",
coord = "tsne",
...
)
x |
a matrix or other object from which coordinates of cells can be extracted. |
... |
further parameters passed to plot_gene_haystack_raw(). |
dim1 |
column index or name of matrix for x-axis coordinates. |
dim2 |
column index or name of matrix for y-axis coordinates. |
assay |
name of assay data for Seurat method. |
coord |
name of coordinates slot for specific methods. |
slot |
name of slot for assay data for Seurat method. |
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