Files in alextkalinka/linkcomm

Tools for Generating, Visualizing, and Analysing Link Communities in Networks

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/pr-commands.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS

R/OCG_main.R R/linkcomm_main.R R/linkcomm_misc.R R/linkcomm_plotting.R README.md

_pkgdown.yml

codecov.yml

data/networks.rda

demo/00Index

demo/linkcomm.R

docs/404.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/imgs/spenc-circ.png

docs/imgs/summ.png

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/LinkDensities-1.png

docs/reference/LinkDensities.html

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/Rplot003.png

docs/reference/Rplot004.png

docs/reference/Rplot005.png

docs/reference/Rplot006.png

docs/reference/Rplot007.png

docs/reference/Rplot008.png

docs/reference/Rplot009.png

docs/reference/Rplot010.png

docs/reference/Rplot011.png

docs/reference/Rplot012.png

docs/reference/corLinkcommCentrality-1.png

docs/reference/corLinkcommCentrality-2.png

docs/reference/corLinkcommCentrality.html

docs/reference/cutDendrogramAt-1.png

docs/reference/cutDendrogramAt-2.png

docs/reference/cutDendrogramAt-3.png

docs/reference/cutDendrogramAt.html

docs/reference/edge.duplicates.html

docs/reference/get.community.overlaps-1.png

docs/reference/get.community.overlaps.html

docs/reference/get.shared.nodes-1.png

docs/reference/get.shared.nodes.html

docs/reference/getAllNestedComm-1.png

docs/reference/getAllNestedComm.html

docs/reference/getClusterRelatedness-1.png

docs/reference/getClusterRelatedness-2.png

docs/reference/getClusterRelatedness-3.png

docs/reference/getClusterRelatedness.html

docs/reference/getCommunityCentrality-1.png

docs/reference/getCommunityCentrality.html

docs/reference/getCommunityConnectedness-1.png

docs/reference/getCommunityConnectedness.html

docs/reference/getCommunityMatrix-1.png

docs/reference/getCommunityMatrix.html

docs/reference/getEdgesIn-1.png

docs/reference/getEdgesIn.html

docs/reference/getLinkCommunities-1.png

docs/reference/getLinkCommunities-2.png

docs/reference/getLinkCommunities-3.png

docs/reference/getLinkCommunities-4.png

docs/reference/getLinkCommunities-5.png

docs/reference/getLinkCommunities-6.png

docs/reference/getLinkCommunities.html

docs/reference/getNestedHierarchies-1.png

docs/reference/getNestedHierarchies.html

docs/reference/getNodesIn-1.png

docs/reference/getNodesIn.html

docs/reference/getOCG.clusters.html

docs/reference/graph.feature-1.png

docs/reference/graph.feature.html

docs/reference/human_pp.html

docs/reference/index.html

docs/reference/integer.edgelist.html

docs/reference/karate.html

docs/reference/layout.spencer.circle-1.png

docs/reference/layout.spencer.circle.html

docs/reference/lesmiserables.html

docs/reference/linkcomm-package-1.png

docs/reference/linkcomm-package-2.png

docs/reference/linkcomm-package-3.png

docs/reference/linkcomm-package-4.png

docs/reference/linkcomm-package.html

docs/reference/linkcomm2clustnsee-1.png

docs/reference/linkcomm2clustnsee.html

docs/reference/linkcomm2cytoscape-1.png

docs/reference/linkcomm2cytoscape.html

docs/reference/meta.communities-1.png

docs/reference/meta.communities.html

docs/reference/newLinkCommsAt-1.png

docs/reference/newLinkCommsAt.html

docs/reference/numberEdgesIn.html

docs/reference/orderCommunities-1.png

docs/reference/orderCommunities.html

docs/reference/plot.OCG-1.png

docs/reference/plot.OCG.html

docs/reference/plot.linkcomm-1.png

docs/reference/plot.linkcomm-2.png

docs/reference/plot.linkcomm.html

docs/reference/plotLinkCommDend-1.png

docs/reference/plotLinkCommDend-2.png

docs/reference/plotLinkCommDend.html

docs/reference/plotLinkCommGraph-1.png

docs/reference/plotLinkCommGraph-2.png

docs/reference/plotLinkCommGraph-3.png

docs/reference/plotLinkCommGraph.html

docs/reference/plotLinkCommMembers-1.png

docs/reference/plotLinkCommMembers-2.png

docs/reference/plotLinkCommMembers.html

docs/reference/plotLinkCommSumm-1.png

docs/reference/plotLinkCommSumm-2.png

docs/reference/plotLinkCommSumm.html

docs/reference/plotLinkCommSummComm-1.png

docs/reference/plotLinkCommSummComm.html

docs/reference/plotOCGraph-1.png

docs/reference/plotOCGraph.html

docs/reference/pp_rnapol.html

docs/reference/print.OCG.html

docs/reference/print.linkcomm-1.png

docs/reference/print.linkcomm.html

docs/reference/read.OCG.html

docs/reference/weighted.html

docs/reference/which.communities.html

imgs/spenc-circ.png

imgs/summ.png

inst/CITATION

man/LinkDensities.Rd man/corLinkcommCentrality.Rd man/cutDendrogramAt.Rd man/edge.duplicates.Rd man/get.community.overlaps.Rd man/get.shared.nodes.Rd man/getAllNestedComm.Rd man/getClusterRelatedness.Rd man/getCommunityCentrality.Rd man/getCommunityConnectedness.Rd man/getCommunityMatrix.Rd man/getEdgesIn.Rd man/getLinkCommunities.Rd man/getNestedHierarchies.Rd man/getNodesIn.Rd man/getOCG.clusters.Rd man/graph.feature.Rd man/human_pp.Rd man/integer.edgelist.Rd man/karate.Rd man/layout.spencer.circle.Rd man/lesmiserables.Rd man/linkcomm-package.Rd man/linkcomm2clustnsee.Rd man/linkcomm2cytoscape.Rd man/meta.communities.Rd man/newLinkCommsAt.Rd man/numberEdgesIn.Rd man/orderCommunities.Rd man/plot.OCG.Rd man/plot.linkcomm.Rd man/plotLinkCommDend.Rd man/plotLinkCommGraph.Rd man/plotLinkCommMembers.Rd man/plotLinkCommSumm.Rd man/plotLinkCommSummComm.Rd man/plotOCGraph.Rd man/pp_rnapol.Rd man/print.OCG.Rd man/print.linkcomm.Rd man/read.OCG.Rd man/weighted.Rd man/which.communities.Rd

src/OCG_algorithm.c

src/edge_duplicates.cpp

src/linkcomm_edgesims.cpp

src/linkcomm_edgesims_all.cpp

src/linkcomm_functions.cpp

src/linkcomm_hclust.cpp

src/linkcomm_init.c

src/linkcomm_linkdensities.cpp

src/linkcommhclust_order.cpp

src/read_OCG.cpp

vignettes/linkcomm.pdf

vignettes/linkcomm.pdf.asis

alextkalinka/linkcomm documentation built on Feb. 11, 2021, 4:53 a.m.