Description Usage Arguments Details Value Author(s) References See Also Examples
View source: R/linkcomm_plotting.R
This function is called by plot.linkcomm
to plot a dendrogram of coloured link communities.
1 2 3 |
x |
An object of class |
col |
Logical, whether to add community-specific colours. Defaults to TRUE. |
pal |
A character vector describing a colour palette to be used for colouring the communites in the dendrogram plot. Defaults to |
height |
A numerical value specifying the height at which the dendrogram is cut. Defaults to the maximum partition density height. |
right |
Logical, whether to orient the dendrogram to the right. Defaults to FALSE. |
labels |
Logical, whether to include labels in the dendrogram. Defaults to FALSE. |
plotcut |
Logical, whether to display a horizontal line where the dendrogram is cut. Defaults to TRUE. |
droptrivial |
Logical, whether to not colour communities of size 2. Defaults to TRUE. |
leaflab |
A character string describing the leaf labels on the dendrogram. Can be one of |
verbose |
Logical, whether to display the progress of colouring the dendrogram on screen. Defaults to TRUE. |
... |
Additional arguments to be passed to |
Here we describe the parameters for plotting coloured dendrograms using:
plot(x, type = "dend")
A dendrogram plot.
Alex T. Kalinka alex.t.kalinka@gmail.com
Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.
1 2 3 4 5 6 | ## Generate graph and extract link communities.
g <- swiss[,3:4]
lc <- getLinkCommunities(g)
## Plot a coloured dendrogram.
plot(lc, type = "dend")
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