Description Usage Arguments Details Value Author(s) References See Also Examples
View source: R/linkcomm_plotting.R
This function is called by plot.linkcomm
to plot either connectedness or modularity of individual link communities.
1 2 3 |
x |
An object of class |
clusterids |
An integer vector of community IDs. Defaults to all communities. |
summary |
A character string specifying the community summary. Can be one of |
pie |
Logical, whether to plot a pie graph. If FALSE, a bar plot is plotted. Defaults to FALSE. |
col |
Logical, whether to colour each community differently. Defaults to TRUE. |
pal |
A character vector describing a colour palette to be used for colouring the link communities. Defaults to |
random |
Logical, whether to randomise the link colours. Defaults to FALSE. |
verbose |
Logical, whether to print the progress of the calculation to the screen. Defaults to TRUE. |
... |
Additional arguments to be passed to |
Here we describe the parameters for plotting link community summaries using:
plot(x, type = "commsumm", type = "mod")
A bar graph or pie chart.
Alex T. Kalinka alex.t.kalinka@gmail.com
Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.
1 2 3 4 5 6 7 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.