plot.OCG: The 'OCG' Plotting Function

In alextkalinka/linkcomm: Tools for Generating, Visualizing, and Analysing Link Communities in Networks

Description

This function plots various different OCG graphs.

Usage

## S3 method for class 'OCG'
plot(x, type = "", ...)

Arguments

x	An object of class OCG.
type	A character string specifying the type of plot. Can be one of "members" or "graph". See Details below.
...	Additional arguments to be passed to plot.

Details

"members" plots a community membership matrix;
"graph" plots a graph layout of the network with coloured link communities.

See the OCG plotting function for details of arguments that can be passed to plot.OCG: plotOCGraph, plotLinkCommMembers.

Value

Plots to the current device.

Author(s)

Alex T. Kalinka [e-mail]

References

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.

See Also

plotOCGraph, plotLinkCommMembers

Examples

## Generate graph and extract OCG communities.
g <- swiss[,3:4]
oc <- getOCG.clusters(g)

## Plot a graph of OCG clusters.
plot(oc, type = "graph")

alextkalinka/linkcomm documentation built on Feb. 11, 2021, 4:53 a.m.