orderCommunities: Order Link Communities According to the Dendrogram
In alextkalinka/linkcomm: Tools for Generating, Visualizing, and Analysing Link Communities in Networks

Description Usage Arguments Details Value Author(s) References See Also Examples

This function returns link communities in the same order as in the hierarchical clustering dendrogram.

1	orderCommunities(x, clusterids = 1:x$numbers[3], verbose = TRUE)

`x`	An object of class `linkcomm`.
`clusterids`	An integer vector of community IDs. Defaults to all communities.
`verbose`	Logical, whether to print progress of the calculation to the screen. Defaults to TRUE.

Ordering link communities according to the dendrogram can aid in visualization when plotting them as a Spencer circle because it minimses crossing over between links.

A list with the following components:

`ordered`	A list of integer vectors. These are the ordered communities of links.
`clusids`	An integer vector of community IDs in their new order.

Alex T. Kalinka alex.t.kalinka@gmail.com

Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.

plot.linkcomm, plotLinkCommGraph

## Generate graph and extract link communities.
g <- swiss[,3:4]
lc <- getLinkCommunities(g)

## Order communities according to the dendrogram.
orderCommunities(lc)