Description Usage Arguments Details Value Author(s) References See Also Examples
View source: R/linkcomm_plotting.R
This function plots various different linkcomm
graphs.
1 2 |
x |
An object of class |
type |
A character string specifying the type of plot. Can be one of |
... |
Additional arguments to be passed to |
"summary"
plots the dendrogram and partition density plot side-by-side;
"members"
plots a community membership matrix;
"graph"
plots a graph layout of the network with coloured link communities;
"commsumm"
plots a bar graph or pie chart summarising community modularity or connectedness for each community;
"dend"
plots a dendrogram with coloured link communities.
See the individual plotting functions for details of arguments that can be passed to plot.linkcomm
: plotLinkCommSumm
, plotLinkCommMembers
, plotLinkCommGraph
, plotLinkCommSummComm
, and plotLinkCommDend
.
Plots to the current device.
Alex T. Kalinka alex.t.kalinka@gmail.com
Kalinka, A.T. and Tomancak, P. (2011). linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type. Bioinformatics 27, 2011-2012.
plotLinkCommSumm
, plotLinkCommMembers
, plotLinkCommGraph
, plotLinkCommSummComm
, plotLinkCommDend
1 2 3 4 5 6 | ## Generate graph and extract link communities.
g <- swiss[,3:4]
lc <- getLinkCommunities(g)
## Plot a graph of link communities.
plot(lc, type = "graph")
|
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