ch2_subset: Subset for Paired Two-Channel ExpressionSet

View source: R/diff_utils.R

ch2_subsetR Documentation

Subset for Paired Two-Channel ExpressionSet

Description

Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.

Usage

ch2_subset(eset, prev_anal)

Arguments

eset

Annotated ExpressionSet. Created by load_raw.

prev_anal

One item (for eset) from previous result of diff_expr.

Value

ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.


alexvpickering/crossmeta documentation built on May 23, 2024, 5:06 a.m.