ch2_subset: Subset for Paired Two-Channel ExpressionSet
In alexvpickering/crossmeta: Cross Platform Meta-Analysis of Microarray Data
ch2_subset R Documentation
Subset for Paired Two-Channel ExpressionSet
Description
Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation.
If not using one channel in contrasts (e.g. because all reference RNA) and have paired design,
better to treat as single channel so that can use duplicateCorrelation.
Usage
ch2_subset(eset, prev_anal)
Arguments
eset
Annotated ExpressionSet. Created by load_raw.
prev_anal
One item (for eset) from previous result of diff_expr.
Value
ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.
alexvpickering/crossmeta documentation built on June 2, 2022, 7:06 a.m.
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| ch2_subset | R Documentation |
Subset for Paired Two-Channel ExpressionSet
Description
Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.
Usage
ch2_subset(eset, prev_anal)
Arguments
eset |
Annotated ExpressionSet. Created by |
prev_anal |
One item (for eset) from previous result of |
Value
ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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