load_plat: Load and pre-process raw Affymetrix, Illumina, and Agilent...

View source: R/load_utils.R

load_platR Documentation

Load and pre-process raw Affymetrix, Illumina, and Agilent microarrays.

Description

Load raw files previously downloaded with get_raw. Used by load_raw.

Usage

load_plat(gse_name, data_dir, gpl_dir, ensql)

Arguments

gse_name

GSE names.

data_dir

String specifying directory with GSE folder.

gpl_dir

String specifying parent directory to search for previously downloaded GPL.soft files.

ensql

For development. Path to sqlite file with ENTREZID and SYMBOL columns created in data-raw/entrezdt.

Details

Data is normalized, SYMBOL and PROBE annotation are added to fData slot.

Value

List of annotated esets, one for each platform in gse_name.

See Also

get_raw to obtain raw data.


alexvpickering/crossmeta documentation built on May 23, 2024, 5:06 a.m.