load_plat: Load and pre-process raw Affymetrix, Illumina, and Agilent...
In alexvpickering/crossmeta: Cross Platform Meta-Analysis of Microarray Data
load_plat R Documentation
Load and pre-process raw Affymetrix, Illumina, and Agilent microarrays.
Description
Load raw files previously downloaded with get_raw. Used by load_raw.
Usage
load_plat(gse_name, data_dir, gpl_dir, ensql)
Arguments
gse_name
GSE names.
data_dir
String specifying directory with GSE folder.
gpl_dir
String specifying parent directory to search for previously downloaded GPL.soft files.
ensql
For development. Path to sqlite file with ENTREZID and SYMBOL columns created in data-raw/entrezdt.
Details
Data is normalized, SYMBOL and PROBE annotation are added to fData slot.
Value
List of annotated esets, one for each platform in gse_name.
See Also
get_raw to obtain raw data.
alexvpickering/crossmeta documentation built on May 23, 2024, 5:06 a.m.
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| load_plat | R Documentation |
Load and pre-process raw Affymetrix, Illumina, and Agilent microarrays.
Description
Load raw files previously downloaded with get_raw. Used by load_raw.
Usage
load_plat(gse_name, data_dir, gpl_dir, ensql)
Arguments
gse_name |
GSE names. |
data_dir |
String specifying directory with GSE folder. |
gpl_dir |
String specifying parent directory to search for previously downloaded GPL.soft files. |
ensql |
For development. Path to sqlite file with ENTREZID and SYMBOL columns created in data-raw/entrezdt. |
Details
Data is normalized, SYMBOL and PROBE annotation are added to fData slot.
Value
List of annotated esets, one for each platform in gse_name.
See Also
get_raw to obtain raw data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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