Files in alexvpickering/crossmeta
Cross Platform Meta-Analysis of Microarray Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/add_source.R
R/data.R
R/diff_expr.R
R/diff_utils.R
R/filter_genes.R
R/get_vsd.R
R/illum_headers.R
R/load_affy.R
R/load_agil.R
R/load_illum.R
R/load_utils.R
R/meta_utils.R
R/modules-contrasts-server.R
R/modules-contrasts-ui.R
R/run_select_contrasts.R
R/setup_prev.R
R/sysdata.rda
README.md
crossmeta.Rproj
data-raw/KEGG/gs.names.rds
data-raw/KEGG/gslist.rds
data-raw/KEGG/hsa/2019-03-27
data-raw/KEGG/kegg.R
data-raw/entrezdt/entrezdt.R
data-raw/homologene/homologene.R
data-raw/homologene/homologene.rds
data-raw/platforms/gpl_bioc.rds
data-raw/sources/sources.R
data-raw/sources/sources.rds
data-raw/species/org_package.R
data-raw/species/org_pkg.rds
data-raw/species/org_taxid.R
data-raw/species/org_taxid.rds
data-raw/sysdata.R
data/gs.names.rda
data/gslist.rda
inst/select_contrasts/global.R
inst/select_contrasts/server.R
inst/select_contrasts/ui.R
inst/select_contrasts/www/select_contrasts.css
inst/select_contrasts/www/select_contrasts.js
inst/testdata/Apoa1.RData
man/addContrastInput.Rd
man/add_adjusted.Rd
man/add_sources.Rd
man/add_vsd.Rd
man/bulkAnnot.Rd
man/bulkAnnotInput.Rd
man/bulkForm.Rd
man/bulkFormInput.Rd
man/bulkPage.Rd
man/bulkPageUI.Rd
man/bulkTable.Rd
man/bulkTableOuput.Rd
man/ch2_subset.Rd
man/clean_y.Rd
man/delContrastsInput.Rd
man/diff_expr.Rd
man/es_meta.Rd
man/exprs.MA.Rd
man/filter_genes.Rd
man/fit_ebayes.Rd
man/fit_lm.Rd
man/fix_illum_headers.Rd
man/format_dl_annot.Rd
man/format_up_annot.Rd
man/get_ch2_mod.Rd
man/get_group_levels.Rd
man/get_palette.Rd
man/get_raw.Rd
man/get_sva_mods.Rd
man/get_top_table.Rd
man/get_vsd.Rd
man/gs.names.Rd
man/gslist.Rd
man/ilmn.nnum.Rd
man/iqr_replicates.Rd
man/is_invertible.Rd
man/load_agil_plat.Rd
man/load_diff.Rd
man/load_illum_plat.Rd
man/load_plat.Rd
man/load_raw.Rd
man/makeExampleCountsEset.Rd
man/match_prev_eset.Rd
man/open_raw_illum.Rd
man/phenoData.ch2.Rd
man/prefix_illum_headers.Rd
man/query_ref.Rd
man/remove_autonamed.Rd
man/run_limma.Rd
man/run_limma_setup.Rd
man/run_lmfit.Rd
man/run_select_contrasts.Rd
man/run_sva.Rd
man/setup_prev.Rd
man/symbol_annot.Rd
man/to_eset.Rd
man/to_ma.Rd
man/validate_up_annot.Rd
man/which_max_iqr.Rd
man/xls_to_txt.Rd
tests/testthat.R
tests/testthat/test-all.R
tests/testthat/test-diff_expr.R
tests/testthat/test-match.R
tests/testthat/test-two-channel.R
tests/testthat/test-which_max_iqr.R
vignettes/crossmeta-vignette.Rmd
