run_lmfit: Perform lmFit analysis from limma.
In alexvpickering/crossmeta: Cross Platform Meta-Analysis of Microarray Data
run_lmfit R Documentation
Perform lmFit analysis from limma.
Description
If paired samples, runs duplicateCorrelation to estimate intra-patient variance.
Usage
run_lmfit(eset, mod, rna_seq = TRUE)
Arguments
eset
Annotated eset created by load_raw. Non-selected samples
and duplicate features removed by add_contrasts and
iqr_replicates.
mod
Model matrix generated by diff_setup. With
or without surrogate variables.
rna_seq
Is this an RNA-seq eset? Default is TRUE.
Value
result from call to limma lmFit.
alexvpickering/crossmeta documentation built on June 2, 2022, 7:06 a.m.
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| run_lmfit | R Documentation |
Perform lmFit analysis from limma.
Description
If paired samples, runs duplicateCorrelation to estimate intra-patient variance.
Usage
run_lmfit(eset, mod, rna_seq = TRUE)
Arguments
eset |
Annotated eset created by |
mod |
Model matrix generated by |
rna_seq |
Is this an RNA-seq |
Value
result from call to limma lmFit.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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