fix_illum_headers: Attempts to fix Illumina raw data header
In alexvpickering/crossmeta: Cross Platform Meta-Analysis of Microarray Data
View source: R/illum_headers.R
fix_illum_headers R Documentation
Attempts to fix Illumina raw data header
Description
Reads raw data files and tries to fix them up so that they can be loaded by read.ilmn.
Usage
fix_illum_headers(elist_paths, eset = NULL)
Arguments
elist_paths
Path to Illumina raw data files. Usually contain patterns:
non_normalized.txt, raw.txt, or _supplementary_.txt
eset
ExpressionSet from getGEO.
Value
Character vector for annotation argument to read.ilmn. Fixed raw data files
are saved with filename ending in _fixed.txt
alexvpickering/crossmeta documentation built on June 2, 2022, 7:06 a.m.
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View source: R/illum_headers.R
| fix_illum_headers | R Documentation |
Attempts to fix Illumina raw data header
Description
Reads raw data files and tries to fix them up so that they can be loaded by read.ilmn.
Usage
fix_illum_headers(elist_paths, eset = NULL)
Arguments
elist_paths |
Path to Illumina raw data files. Usually contain patterns: non_normalized.txt, raw.txt, or _supplementary_.txt |
eset |
ExpressionSet from getGEO. |
Value
Character vector for annotation argument to read.ilmn. Fixed raw data files
are saved with filename ending in _fixed.txt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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