fix_illum_headers: Attempts to fix Illumina raw data header

View source: R/illum_headers.R

fix_illum_headersR Documentation

Attempts to fix Illumina raw data header

Description

Reads raw data files and tries to fix them up so that they can be loaded by read.ilmn.

Usage

fix_illum_headers(elist_paths, eset = NULL)

Arguments

elist_paths

Path to Illumina raw data files. Usually contain patterns: non_normalized.txt, raw.txt, or _supplementary_.txt

eset

ExpressionSet from getGEO.

Value

Character vector for annotation argument to read.ilmn. Fixed raw data files are saved with filename ending in _fixed.txt


alexvpickering/crossmeta documentation built on May 23, 2024, 5:06 a.m.