run_select_contrasts: Shiny gadget to upload groups and select contrasts

View source: R/run_select_contrasts.R

run_select_contrastsR Documentation

Shiny gadget to upload groups and select contrasts

Description

Shiny gadget to upload groups and select contrasts

Usage

run_select_contrasts(
  eset,
  gse_name,
  prev = NULL,
  app_dir = system.file("select_contrasts", package = "crossmeta", mustWork = TRUE),
  port = 3838
)

Arguments

eset

ExpressionSet

gse_name

GEO accession for the series.

prev

Previous result of diff_expr. Used to allow rechecking previous selections.

app_dir

Directory to shiny app. For local development use 'inst/select_contrasts'. Default is in 'select_contrasts' sub directory of crossmeta package.

port

See runApp().

Value

result of setup_prev. Used to specify sample groups and contrasts for differential expression analysis.


alexvpickering/crossmeta documentation built on May 23, 2024, 5:06 a.m.