View source: R/run_select_contrasts.R
run_select_contrasts | R Documentation |
Shiny gadget to upload groups and select contrasts
run_select_contrasts(
eset,
gse_name,
prev = NULL,
app_dir = system.file("select_contrasts", package = "crossmeta", mustWork = TRUE),
port = 3838
)
eset |
ExpressionSet |
gse_name |
GEO accession for the series. |
prev |
Previous result of |
app_dir |
Directory to shiny app. For local development use 'inst/select_contrasts'. Default is in 'select_contrasts' sub directory of crossmeta package. |
port |
See |
result of setup_prev. Used to specify sample groups and contrasts for differential expression analysis.
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