Files in almeidasilvaf/BioNERO

Biological Network Reconstruction Omnibus

NEWS.md R/BioNERO-package.R R/consensus_modules.R R/data.R R/data_preprocess.R R/evolutionary_analysis.R R/exploratory_analysis.R R/gcn_inference.R R/grn_inference.R R/network_comparison.R R/network_stats.R R/network_visualization.R R/utils.R README.Rmd README.md inst/script/README.md man/BioNERO-package.Rd man/PC_correction.Rd man/SFT_fit.Rd man/ZKfiltering.Rd man/check_SFT.Rd man/consensus_SFT_fit.Rd man/consensus_modules.Rd man/consensus_trait_cor.Rd man/cor2adj.Rd man/cormat_to_edgelist.Rd man/detect_communities.Rd man/dfs2one.Rd man/enrichment_analysis.Rd man/exp2cor.Rd man/exp2gcn.Rd man/exp2gcn_blockwise.Rd man/exp2grn.Rd man/exp_genes2orthogroups.Rd man/exp_preprocess.Rd man/filt.se.Rd man/filter_by_variance.Rd man/gene_significance.Rd man/get_HK.Rd man/get_edge_list.Rd man/get_hubs_gcn.Rd man/get_hubs_grn.Rd man/get_neighbors.Rd man/grn_average_rank.Rd man/grn_combined.Rd man/grn_filter.Rd man/grn_infer.Rd man/is_singleton.Rd man/modPres_WGCNA.Rd man/modPres_netrep.Rd man/module_enrichment.Rd man/module_preservation.Rd man/module_stability.Rd man/module_trait_cor.Rd man/net_stats.Rd man/og.zma.osa.Rd man/osa.se.Rd man/parse_orthofinder.Rd man/plot_PCA.Rd man/plot_dendro_and_colors.Rd man/plot_eigengene_network.Rd man/plot_expression_profile.Rd man/plot_gcn.Rd man/plot_gene_significance.Rd man/plot_grn.Rd man/plot_heatmap.Rd man/plot_module_trait_cor.Rd man/plot_ngenes_per_module.Rd man/plot_ppi.Rd man/q_normalize.Rd man/remove_nonexp.Rd man/replace_na.Rd man/zma.interpro.Rd man/zma.se.Rd man/zma.tfs.Rd tests/testthat.R tests/testthat/test_comparison.R tests/testthat/test_consensusmodules.R tests/testthat/test_data_preprocess.R tests/testthat/test_evolutionary.R tests/testthat/test_exploratory_analyses.R tests/testthat/test_gcn.R tests/testthat/test_grn.R tests/testthat/test_stats.R tests/testthat/test_utils.R tests/testthat/test_visualization.R vignettes/vignette_01_GCN_inference.Rmd vignettes/vignette_02_GRN_inference.Rmd vignettes/vignette_03_network_comparison.Rmd