SFT_fit: Pick power to fit network to a scale-free topology

In almeidasilvaf/BioNERO: Biological Network Reconstruction Omnibus

Pick power to fit network to a scale-free topology

Description

Pick power to fit network to a scale-free topology

Usage

SFT_fit(exp, net_type = "signed", rsquared = 0.8, cor_method = "spearman")

Arguments

exp	A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object.
net_type	Network type. One of 'signed', 'signed hybrid' or 'unsigned'. Default is signed.
rsquared	R squared cutoff. Default is 0.8.
cor_method	Correlation method. One of "pearson", "biweight" or "spearman". Default is "spearman".

Value

A list containing:

• powerOptimal power based on scale-free topology fit

• plotA ggplot object displaying main statistics of the SFT fit test

Author(s)

Fabricio Almeida-Silva

See Also

pickSoftThreshold

Examples

data(filt.se)
sft <- SFT_fit(filt.se, cor_method = "pearson")

almeidasilvaf/BioNERO documentation built on Oct. 9, 2024, 1:49 a.m.