Man pages for altintasali/ontoClust
Cluster Gene Ontology Terms
| createLCmatrix | Create a binary matrix of LC members |
| createOntologyNetwork | Create ontology network |
| createWordCloud | Create Word Cloud |
| detectOntoDB | Detect ontology database from ontology ID |
| do2description | Disease Ontology (DO) to Description |
| do2gene | Disease Ontology (DO) to Gene ID (ENTREZ) |
| dot-createWordCloud | Engine for Create Word Cloud |
| dot-detectOntoDB | Detect ontology database from ontology ID. |
| dot-kegg2description | KEGG ID to Description |
| dot-kegg2gene | KEGG to Gene ID |
| dot-mkegg2description | MKEGG ID to Description |
| getLC | Get Link Communities |
| getOntoClust | Get clusters of link communities |
| go2description | Gene Ontology (GO) to Description |
| go2gene | Gene Ontology (GO) to Gene ID |
| heatmapOntoClust | Create a heatmap of ontology clusters |
| jaccardIndex | Calculate Jaccard Index |
| kegg2description | KEGG ID to Description |
| kegg2gene | KEGG to Gene ID |
| mkegg2description | MKEGG ID to Description |
| onto2description | Ontology ID to Ontology Descriptions |
| onto2gene | Ontology ID to gene IDs |
| pipe | Pipe operator |
| plotOntoNetwork | Plot Network of Ontology Clusters |
| plotWordCloud | Plot Word Cloud |
| reactome2description | Reactome ID to Description |
| reactome2gene | Reactome to Gene ID |
| sample_data | Sample ontology data |
