plotWordCloud: Plot Word Cloud
In altintasali/ontoClust: Cluster Gene Ontology Terms

Description Usage Arguments Value Examples

Plot Word Cloud

1	plotWordCloud(wc, n = Inf, freq = TRUE, norm.freq = TRUE)

`wc`	`data.frame` for word cloud with frequencies and group. The columns are word Word (character) freq Frequency of the word (numeric) norm.freq Normalized frequency of the word (numeric). Normalization is done by division by the sum of frequencies group ID of Ontology Cluster or Link Community (numeric)
`n`	Top "n" words to plot (numeric). Default is Inf (infinite), which uses all available words.
`freq`	Use frequency of the words as size. Default TRUE.
`norm.freq`	Use normalized frequency of the words as size. Default TRUE.

A ggwordcloud object

ontology.id <- sample_data$GOBP$ID[1:50]
network <- createOntologyNetwork(ontology.id, method = "jaccard", weighted = FALSE)
lc <- getLC(network)
oc <- getOntoClust(lc)
wc <- createWordCloud(oc)
plotWordCloud(wc, n = 10, freq = TRUE, norm.freq = TRUE)