createLCmatrix: Create a binary matrix of LC members
In altintasali/ontoClust: Cluster Gene Ontology Terms
Description
Usage
Arguments
Value
Examples
Description
Create a binary matrix of LC members
Usage
1
createLCmatrix(lc, includeOutlierLC = FALSE)
Arguments
lc
Output of getLC
includeOutlierLC
Include the ontology terms that are not part of a link community. Default FALSE
Value
Binary LC membership matrix. Rows: ontology terms, columns: link communities.
Examples
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## Not run:
ontology.id <- sample_data$GOBP$ID[1:100]
network <- createOntologyNetwork(ontology.id, method = "jaccard", weighted = FALSE)
lc <- getLC(network)
createLCmatrix(lc)
## End(Not run)
altintasali/ontoClust documentation built on Dec. 19, 2021, 1:36 a.m.
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Description Usage Arguments Value Examples
Description
Create a binary matrix of LC members
Usage
1 | createLCmatrix(lc, includeOutlierLC = FALSE)
|
Arguments
lc |
Output of |
includeOutlierLC |
Include the ontology terms that are not part of a link community. Default FALSE |
Value
Binary LC membership matrix. Rows: ontology terms, columns: link communities.
Examples
1 2 3 4 5 6 7 | ## Not run:
ontology.id <- sample_data$GOBP$ID[1:100]
network <- createOntologyNetwork(ontology.id, method = "jaccard", weighted = FALSE)
lc <- getLC(network)
createLCmatrix(lc)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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