Sample data.table
containing enrichment results (over-representation, ORA) from different databases, which are:
Disease Ontology
Gene Ontology (GO), Biological Process (BP)
Gene Ontology (GO), Molecular Function (MF)
Gene Ontology (GO), Cellular Component(CC)
Kyoto Encyclopedia of Genes and Genomes
KEGG Modules
Reactome
1 |
data.table
columns for each item in the list
contain:
Comparison made by differential expression analysis (e.g. AvsB: Group A vs. Group B)
Enriched term with up-regulated (up), down-regulated (down) or both up/down-regulated (all) genes
Enrichment methods. ORA: Over-representation analysis
Ontology database
ID of the enrichment term in the ontology database
Description of the enriched term
Gene Ratio. See clusterProfiler
package for details
Background Ratio. See clusterProfiler
package for details
p-value
p-values adjusted for multiple testing using "BH" method. See p.adjust
for details.
p-values adjusted for multiple testing using "qvalue" method. See qvalue
package for details.
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