getLC: Get Link Communities

In altintasali/ontoClust: Cluster Gene Ontology Terms

Description

Get Link Communities

Usage

getLC(network, hcmethod = "single", verbose = TRUE)

Arguments

network	A data.frame representing network with columns "source", "target" and "weight" (optional).
hcmethod	Hierarchical clustering method. See hclust for details. Recommended to use "single" for unweighted networks and "ward.D2" for weighted networks.
verbose	Print detailed output. Default is TRUE.

Value

An object of class linkcomm. See getLinkCommunities for details.

Examples

## Not run: 
ontology.id <- sample_data$GOBP$ID[1:100]
network <- createOntologyNetwork(ontology.id, method = "jaccard", weighted = FALSE)
lc <- getLC(network)
lc

## End(Not run)

altintasali/ontoClust documentation built on Dec. 19, 2021, 1:36 a.m.