Files in amandamok/choros
Bias Correction for Ribosome Profiling Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/choros.R
R/correct_bias.R
R/evaluate_bias.R
R/helper.R
R/make_plots.R
R/prep_data.R
README.md
choros.Rproj
inst/extdata/Asite_rules.txt
inst/extdata/scer.transcripts.20cds20.fa
inst/extdata/scer.transcripts.20cds20.lengths.txt
inst/extdata/scer_100_80.paralogs.id.txt
inst/extdata/tunney_footprints_top5genes.bam
man/calculate_codon_density.Rd
man/calculate_transcript_density.Rd
man/choose_subsets.Rd
man/choros.Rd
man/compute_rpf_gc.Rd
man/convert_to_aa.Rd
man/correct_bias.Rd
man/count_d5_d3.Rd
man/count_footprints.Rd
man/count_nonzero_codons.Rd
man/evaluate_bias.Rd
man/get_bias_seq.Rd
man/get_codons.Rd
man/init_data.Rd
man/load_anno.Rd
man/load_bam.Rd
man/match_rows.Rd
man/parse_coefs.Rd
man/plot_bias.Rd
man/plot_coefs.Rd
man/plot_diagnostic.Rd
man/write_fasta.Rd
vignettes/choros_vignette.Rmd
