demo/repBaseClass.R
In arcolombo/TxDbLite: Lightweight SQLite-based annotation classes/packages for use with arkas
source("repPrep.R")
source("repBaseToRmsk.R")
humanRepeats <- c("humrep.fa", "humsub.fa")
human <- suppressWarnings(repPrep(humanRepeats))
repClass <- readRDS("repClass.rds")
humanRepClass <- repBaseToRmsk(human, repClass, method='lv')
## same for mouse
#
# mouseRepeats <- c("mousub.fa", "rodrep.fa")
# mouse <- suppressWarnings(repPrep(mouseRepeats))
arcolombo/TxDbLite documentation built on July 10, 2020, 12:27 a.m.
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source("repPrep.R")
source("repBaseToRmsk.R")
humanRepeats <- c("humrep.fa", "humsub.fa")
human <- suppressWarnings(repPrep(humanRepeats))
repClass <- readRDS("repClass.rds")
humanRepClass <- repBaseToRmsk(human, repClass, method='lv')
## same for mouse
#
# mouseRepeats <- c("mousub.fa", "rodrep.fa")
# mouse <- suppressWarnings(repPrep(mouseRepeats))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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