areyesq89/DEXSeq: Inference of differential exon usage in RNA-Seq

The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.

Getting started

Package details

AuthorSimon Anders <[email protected]> and Alejandro Reyes <[email protected]>
Bioconductor views AlternativeSplicing DifferentialExpression DifferentialSplicing GeneExpression RNASeq Sequencing Visualization
MaintainerAlejandro Reyes <[email protected]>
LicenseGPL (>= 3)
Version1.25.6
URL
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("areyesq89/DEXSeq")
areyesq89/DEXSeq documentation built on April 9, 2018, 10:01 a.m.