DEXSeqResults: DEXSeqResults object
In areyesq89/DEXSeq: Inference of differential exon usage in RNA-Seq

DEXSeqResults-class

R Documentation

DEXSeqResults object

Description

The DEXSeqResults object is a subclass of a DataFrame. It collects relevant information from a DEXSeqDataSet object with the results generated from testing for differences in exon usage.

Usage

  DEXSeqResults( object, independentFiltering=TRUE, filter)

Arguments

`object`	A `DEXSeqDataSet` object.
`independentFiltering`	Logical indicating whether independent filtering should be applied automatically.
`filter`	A vector of filter statistics over which the independent filtering will be optimized. The default is the normalized exon means.

Value

A DEXSeqResults object.

Examples

  data(pasillaDEXSeqDataSet, package="pasilla")
  dxd <- estimateSizeFactors( dxd )
  dxd <- estimateDispersions( dxd )
  dxd <- testForDEU( dxd )
  dxr <- DEXSeqResults( dxd )

areyesq89/DEXSeq documentation built on Oct. 15, 2023, 1:40 p.m.