plotDispEsts: Plot dispersion estimates

Description Usage Arguments

Description

A simple helper function that plots the per-gene dispersion estimates together with the fitted mean-dispersion relationship. Internally, it is a wrapper for the pltoDispEsts method from DESeq2.

Usage

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## S4 method for signature 'DEXSeqDataSet'
plotDispEsts(object, ymin,
  genecol = "black", fitcol = "red", finalcol = "dodgerblue",
  legend=TRUE, xlab, ylab, log = "xy", cex = 0.45, ...)

Arguments

object

a DESeqDataSet

ymin

the lower bound for points on the plot, points beyond this are drawn as triangles at ymin

genecol

the color for gene-wise dispersion estimates

fitcol

the color of the fitted estimates

finalcol

the color of the final estimates used for testing

legend

logical, whether to draw a legend

xlab

xlab

ylab

ylab

log

log

cex

cex

...

further arguments to plot


areyesq89/DEXSeq documentation built on June 26, 2020, 2:31 a.m.