plotDispEsts: Plot dispersion estimates

In areyesq89/DEXSeq: Inference of differential exon usage in RNA-Seq

Plot dispersion estimates

Description

A simple helper function that plots the per-gene dispersion estimates together with the fitted mean-dispersion relationship. Internally, it is a wrapper for the pltoDispEsts method from DESeq2.

Usage

## S4 method for signature 'DEXSeqDataSet'
plotDispEsts(object, ymin,
  genecol = "black", fitcol = "red", finalcol = "dodgerblue",
  legend=TRUE, xlab, ylab, log = "xy", cex = 0.45, ...)

Arguments

object	a DESeqDataSet
ymin	the lower bound for points on the plot, points beyond this are drawn as triangles at ymin
genecol	the color for gene-wise dispersion estimates
fitcol	the color of the fitted estimates
finalcol	the color of the final estimates used for testing
legend	logical, whether to draw a legend
xlab	xlab
ylab	ylab
log	log
cex	cex
...	further arguments to plot

areyesq89/DEXSeq documentation built on Oct. 15, 2023, 1:40 p.m.