API for areyesq89/DEXSeq
Inference of differential exon usage in RNA-Seq

Global functions
$<-,DEXSeqDataSet-method Man page
DEXSeq Man page Source code
DEXSeq-defunct Man page
DEXSeqDataSet Man page Source code
DEXSeqDataSet-class Man page
DEXSeqDataSetFromHTSeq Man page Source code
DEXSeqDataSetFromSE Man page Source code
DEXSeqHTML Man page Source code
DEXSeqResults Man page Source code
DEXSeqResults-class Man page
[,DEXSeqDataSet,ANY,ANY,ANY-method Man page
[,DEXSeqDataSet,ANY,ANY-method Man page
[,DEXSeqDataSet,ANY-method Man page
[,DEXSeqDataSet-method Man page
apply2 Source code
arrangeCoefs Source code
balanceExons Source code
colData<-,DEXSeqDataSet,DataFrame-method Man page
counts Man page
counts,DEXSeqResults-method Man page
counts.DEXSeqResults Source code
drawGene Source code
drawPlot Source code
estimateDispersions Man page
estimateDispersions,DEXSeqDataSet-method Man page
estimateDispersions.DEXSeqDataSet Source code
estimateExonFoldChanges Man page Source code
estimateSizeFactors Man page
estimateSizeFactors,DEXSeqDataSet-method Man page
estimateSizeFactors.DEXSeqDataSet Source code
exonIDs Man page Source code
exonIDs<- Man page
featureCounts Man page Source code
featureIDs Man page Source code
featureIDs<- Man page
findOverlaps Man page
findOverlaps,DEXSeqResults,GenomicRanges-method Man page
findOverlaps-methods Man page
findOverlaps.DEXSeqResults Source code
fitAndArrangeCoefs Source code
geneIDs Man page Source code
geneIDs<- Man page
getEffectsForExonsSM Source code
getEffectsForGene Source code
getEffectsForGeneBM Source code
getEffectsForPlotting Source code
groupIDs Man page Source code
groupIDs<- Man page
makeBigModelFrame Source code
makePlotPage Source code
makevstaxis Source code
modelFrameSM Source code
perGeneQValue Man page Source code
perGeneQValueBySimulation Source code
perGeneQValueExact Source code
plotDEXSeq Man page Source code
plotDispEsts Man page
plotDispEsts,DEXSeqDataSet-method Man page
plotDispEsts.DEXSeqDataSet Source code
plotMA Man page
plotMA,DEXSeqDataSet-method Man page
plotMA,DEXSeqResults-method Man page
plotMA-methods Man page
plotMA.DEXSeqDataSet Source code
plotMA.DEXSeqResults Source code
rmDepCols Source code
sampleAnnotation Man page Source code
show.DEXSeqResults Source code
subsetByOverlaps Man page
subsetByOverlaps,DEXSeqResults,GenomicRanges-method Man page
subsetByOverlaps-methods Man page
subsetByOverlaps.DEXSeqResults Source code
testForDEU Man page Source code
vst Source code
areyesq89/DEXSeq documentation built on Dec. 5, 2018, 3:29 a.m.