DEXSeq: Performs the differential exon usage test in a single command

In areyesq89/DEXSeq: Inference of differential exon usage in RNA-Seq

Performs the differential exon usage test in a single command

Description

This function is a wrapper that calls the necessary functions to perform a differential exon usage test in a single command.

Usage

  DEXSeq(object, 
    fullModel=design(object),
    reducedModel = ~ sample + exon, 
    BPPARAM=MulticoreParam(workers=1), 
    fitExpToVar="condition", quiet=TRUE )

Arguments

object	An DEXSeqDataSet object.
fullModel	The full model formula
reducedModel	Null model formula.
BPPARAM	A "BiocParallelParam" instance. See ?bplapply for details.
fitExpToVar	A variable name contained in the sample data. The expression values will be fitted to this variable using the the formula " ~ sample + fitExpToVar * exon".
quiet	Whether to print messages at each step

Value

A DEXSeqResults object.

Examples

  ## Not run: 
      data(pasillaDEXSeqDataSet, package="pasilla")
      dxr <- DEXSeq( dxd )
  
## End(Not run)

areyesq89/DEXSeq documentation built on Oct. 15, 2023, 1:40 p.m.