counts: Accessors for the 'counts' slot of a DEXSeqResults object.

In areyesq89/DEXSeq: Inference of differential exon usage in RNA-Seq

Accessors for the 'counts' slot of a DEXSeqResults object.

Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each observational unit (gene or the like), and one column for each sample.

Usage

## S4 method for signature 'DEXSeqResults'
counts(object,normalized=FALSE)

Arguments

object	a DEXSeqResults object.
normalized	logical indicating whether or not to divide the counts by the size factors or normalization factors before returning (normalization factors always preempt size factors)

Value

an integer matrix

Examples

  data(pasillaDEXSeqDataSet, package="pasilla")
  head( counts( dxd ))

areyesq89/DEXSeq documentation built on Oct. 15, 2023, 1:40 p.m.