estimateSizeFactors  R Documentation 
Estimate the size factors for a DEXSeqDataSet
## S4 method for signature 'DEXSeqDataSet'
estimateSizeFactors(object,locfunc=median,geoMeans)
object 
a DEXSeqDataSet 
locfunc 
a function to compute a location for a
sample. By default, the median is used. However,
especially for low counts, the

geoMeans 
by default this is not provided and the geometric means of the counts are calculated within the function. A vector of geometric means from another count matrix can be provided for a "frozen" size factor calculation 
This function calls the method estimateSizeFactors for the DESeqDataSet object, and adapts it to the specific use to the DEXSeqDataSet.
The DEXSeqDataSet passed as parameters, with the size factors filled in.
Simon Anders, Wolfgang Huber: Differential expression analysis for sequence count data. Genome Biology 11 (2010) R106, http://dx.doi.org/10.1186/gb20101110r106
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.