Man pages for areyesq89/DEXSeq
Inference of differential exon usage in RNA-Seq
| accessors | Accessor functions for DEXSeqDataSet details |
| counts | Accessors for the 'counts' slot of a DEXSeqResults object. |
| DEXSeq | Performs the differential exon usage test in a single command |
| DEXSeqDataSet | DEXSeqDataSet object and constructors |
| DEXSeq-defunct | This functions are deprecated and will become defunct. |
| DEXSeqHTML | DEXSeq HTML report writer |
| DEXSeqResults | DEXSeqResults object |
| estimateDispersions | Estimate the dispersions for a DEXSeqDataSet |
| estimateExonFoldChanges | Estimates exon usage coefficients from the fitted terms of... |
| estimateSizeFactors | Estimate the size factors for a DEXSeqDataSet |
| methods-gr | Methods from GRanges overlaps for the DEXSeq object |
| otherMethods | Subset and replacements of DEXSeqDataSet slots |
| perGeneQValue | Summarize per-exon p-values into per-gene q-values. |
| plotDEXSeq | Visualization of the per gene DEXSeq results. |
| plotDispEsts | Plot dispersion estimates |
| plotMA | Generate an MA plot |
| testForDEU | Test for Differential Exon Usage |
