bedToGRanges: Read a file and make a GRanges object

Description Usage Arguments Details Value Examples

Description

bedToGRanges takes a string corresponding to a file and creates a GRanges object, retaining meta-data

Usage

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bedToGRanges(file)

## S4 method for signature 'character'
bedToGRanges(file)

Arguments

file

A string specifiying .bed file location

Details

Useful function to read in a .bed file to create a GRanges object where the meta-data is presevered. Useful for later functions like annotateAnchors

Value

A GRanges object

Examples

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#Read in CTCF Jurkat peaks in
ctcf_j <- system.file('extdata','Jurkat_CTCF_chr1.narrowPeak',package = 'diffloop')
ctcf <- bedToGRanges(ctcf_j)

aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.