loops.small: chr1:36000000-36300000 loops
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Format
Value
Source
Description
A loops object containing unique 108 loops with 27 anchors
for 6 samples and corresponding colData/rowData
Usage
1
Format
A small loops object
- anchors
GRanges object of anchor locations
- loops
indexes of interactions
- samples
Two replicates each of jurkat, naive, and primed cells
- colData
Groups identifying cell type and unnormalized sizeFactors
- rowData
Base initialization with only loopWidth values
...
Value
A loops object
Source
subsetRegion(loops,GRanges(c('1'),IRanges(c(36000000),c(36300000))))
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description Usage Format Value Source
Description
A loops object containing unique 108 loops with 27 anchors for 6 samples and corresponding colData/rowData
Usage
1 |
Format
A small loops object
- anchors
GRanges object of anchor locations
- loops
indexes of interactions
- samples
Two replicates each of jurkat, naive, and primed cells
- colData
Groups identifying cell type and unnormalized sizeFactors
- rowData
Base initialization with only loopWidth values
...
Value
A loops object
Source
subsetRegion(loops,GRanges(c('1'),IRanges(c(36000000),c(36300000))))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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