filterSpanningLoops: Retain loops spanning some genomic feature
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data

filterSpanningLoops returns a loops object where the ends of the anchors completely span one or more genomic feature (e.g. boundary)

filterSpanningLoops(dlo, gf)

## S4 method for signature 'loops,GRanges'
filterSpanningLoops(dlo, gf)

`dlo`	A loops object
`gf`	A GRanges object of features

Rather than a simple overlap, the function by default requires a genomic locus to be completely contacints

An loops object

# Return the width for loops 
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
w <- loopWidth(loops.small)

aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.

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