loopDistancePlot: Visualize proportion of loops at distances
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Arguments
Details
Value
Examples
Description
loopDistancePlot takes a loops object plots the individual samples
based on the proportion of PET counts at various distances
Usage
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loopDistancePlot(dlo)
## S4 method for signature 'loops'
loopDistancePlot(dlo)
Arguments
dlo
A loops object
Details
Distances for the loops are taken from the rowData slot.
Value
A ggplot2 plot
Examples
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rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
p1 <- loopDistancePlot(loops.small)
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description Usage Arguments Details Value Examples
Description
loopDistancePlot takes a loops object plots the individual samples
based on the proportion of PET counts at various distances
Usage
1 2 3 4 | loopDistancePlot(dlo)
## S4 method for signature 'loops'
loopDistancePlot(dlo)
|
Arguments
dlo |
A loops object |
Details
Distances for the loops are taken from the rowData slot.
Value
A ggplot2 plot
Examples
1 2 3 | rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
p1 <- loopDistancePlot(loops.small)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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