calcLDSizeFactors: Compute normalizing factors for each sample
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Arguments
Details
Value
Examples
Description
calcLDSizeFactors takes a loops object computes size
factors based for each sample
Usage
1
2
3
4
calcLDSizeFactors(dlo)
## S4 method for signature 'loops'
calcLDSizeFactors(dlo)
Arguments
dlo
A loops object with unnormalized size factors
Details
This function updates the loops object with new
sizeFactor values for
each sample in the colData slot using a method identical to that
employed in DESeq2.
Value
A loops object with new size factors in colData
Examples
1
2
3
4
# Computing normalizing factors from the full ChIA-PET Data
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
loops.small <- calcLDSizeFactors(loops.small)
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description Usage Arguments Details Value Examples
Description
calcLDSizeFactors takes a loops object computes size
factors based for each sample
Usage
1 2 3 4 | calcLDSizeFactors(dlo)
## S4 method for signature 'loops'
calcLDSizeFactors(dlo)
|
Arguments
dlo |
A loops object with unnormalized size factors |
Details
This function updates the loops object with new
sizeFactor values for
each sample in the colData slot using a method identical to that
employed in DESeq2.
Value
A loops object with new size factors in colData
Examples
1 2 3 4 | # Computing normalizing factors from the full ChIA-PET Data
rda<-paste(system.file('rda',package='diffloop'),'loops.small.rda',sep='/')
load(rda)
loops.small <- calcLDSizeFactors(loops.small)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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