getMouseTSS: Get Mouse Transcription Start Sites
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
Usage
Arguments
Details
Value
Examples
Description
getMouseTSS returns a GRanges object of all
transcription start sites for humans. Regions from mm9 for
protein coding regions.
Usage
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getMouseTSS(chr)
## S4 method for signature 'missing'
getMouseTSS(chr)
## S4 method for signature 'character'
getMouseTSS(chr)
Arguments
chr
Specifies what chromosomes are desired for the TSS#
Details
This function returns a GRanges object with the coordinates and
gene TSS. The start and end of the IRanges slot will be the same number,
so consider using the padGRanges function after calling this function.
Value
A GRanges object
Examples
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# Grab all transition start sites genome-wide
mouse.TSS <- getMouseTSS()
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description Usage Arguments Details Value Examples
Description
getMouseTSS returns a GRanges object of all
transcription start sites for humans. Regions from mm9 for
protein coding regions.
Usage
1 2 3 4 5 6 7 | getMouseTSS(chr)
## S4 method for signature 'missing'
getMouseTSS(chr)
## S4 method for signature 'character'
getMouseTSS(chr)
|
Arguments
chr |
Specifies what chromosomes are desired for the TSS# |
Details
This function returns a GRanges object with the coordinates and
gene TSS. The start and end of the IRanges slot will be the same number,
so consider using the padGRanges function after calling this function.
Value
A GRanges object
Examples
1 2 | # Grab all transition start sites genome-wide
mouse.TSS <- getMouseTSS()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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