loops-class: A class to represent ChIA-PET interaction data and...
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
A class to represent ChIA-PET interaction data and annotations
Slots
anchorsA GRanges object describing loop anchor locations
interactionsA matrix. Each row is an interaction between two anchors
countsA matrix with the number paired-end reads per loop per sample
colDataA data.frame with features (colums) for each sample (rows)
rowDataA data.frame with features (columns) for each loop (rows)
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description
A class to represent ChIA-PET interaction data and annotations
Slots
anchorsA GRanges object describing loop anchor locations
interactionsA matrix. Each row is an interaction between two anchors
countsA matrix with the number paired-end reads per loop per sample
colDataA data.frame with features (colums) for each sample (rows)
rowDataA data.frame with features (columns) for each loop (rows)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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