diffloop: diffloop: A package for differential DNA loop calling from...
In aryeelab/diffloop: Identifying differential DNA loops from chromatin topology data
Description
The diffloop package contains a suite of tools and S4 data objects to
efficiently facilitate the analysis of ChIA-PET datasets. Key features
include differential loop calling, visualization of looping in regions,
quality-control metrics, and principal component analysis across
experiments.
diffloop classes
Three classes mostly comprise the methodology in diffloop. First,
loops is a basic structure that contains one or more ChIA-PET
experiments, loopfit links an edgeR fit to a loops
and currently has little functionality except for generating another
loops object where per-loop summary statistics are added.
aryeelab/diffloop documentation built on May 12, 2019, 3:42 a.m.
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Description
The diffloop package contains a suite of tools and S4 data objects to efficiently facilitate the analysis of ChIA-PET datasets. Key features include differential loop calling, visualization of looping in regions, quality-control metrics, and principal component analysis across experiments.
diffloop classes
Three classes mostly comprise the methodology in diffloop. First,
loops is a basic structure that contains one or more ChIA-PET
experiments, loopfit links an edgeR fit to a loops
and currently has little functionality except for generating another
loops object where per-loop summary statistics are added.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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