exp_data: Normalized BRCA gene expression dataset

In babelomics/hipathia: HiPathia: High-throughput Pathway Analysis

Normalized BRCA gene expression dataset

Description

Experimental design matrix once expression matrix brca_data has been translated to Entrez geens with translate_matrix and normalized using normalize_data.

Usage

data(exp_data)

Format

Matrix with 40 columns and 3184 rows. Row names are Entrez IDs and column names are the TCGA identifyers of the samples.

Details

To create the data, the following functions have been called: trans_data <- translate_matrix(brca_data, "hsa") exp_data <- normalize_data(trans_data)

Value

Matrix with 40 columns and 3184 rows. Row names are Entrez IDs and column names are the TCGA identifyers of the samples.

babelomics/hipathia documentation built on July 27, 2022, 2:23 p.m.