go_vals: Gene Ontology matrix of the BRCA gene expression dataset

go_valsR Documentation

Gene Ontology matrix of the BRCA gene expression dataset

Description

Matrix of Gene Ontology terms activation values for the BRCA dataset. This matrix is computed from the Results object returned by the hipathia function by means of the quantify_terms function.

Usage

data(go_vals)

Format

Matrix with 40 columns and 1654 rows. Row names are Gene Ontology terms and column names are the TCGA identifyers of the samples.

Details

go_vals <- quantify_terms(results, pathways, "GO")

Value

Matrix with 40 columns and 1654 rows. Row names are Gene Ontology terms and column names are the TCGA identifyers of the samples.


babelomics/hipathia documentation built on July 27, 2022, 2:23 p.m.