get_node_names: Tranlates node IDs to node names

In babelomics/hipathia: HiPathia: High-throughput Pathway Analysis

Tranlates node IDs to node names

Description

Translates the node IDs to readable and comprensible names.

The names of the nodes are encoded as "pathway: name", where "pathway" is the pathway to which the node belongs and "node" is the name of the node. Nodes may include more genes than the one depicted in the name.

Usage

get_node_names(metaginfo, names, maxchar = NULL)

Arguments

metaginfo	Pathways object
names	Character vector with the subpathway IDs to be translated
maxchar	Integer, describes the number of maximum characters to be shown. By default no filter is applied.

Value

A character vector including the readable names of the subpathways IDs, in the same order as provided.

Examples

data(results)
pathways_list <- c("hsa03320", "hsa04012")
pathways <- load_pathways(species = "hsa", pathways_list)
node_vals <- get_nodes_data(results)
translated_names <- get_node_names(pathways, rownames(node_vals))

babelomics/hipathia documentation built on July 27, 2022, 2:23 p.m.