top_pathways: Computes pathway significance

In babelomics/hipathia: HiPathia: High-throughput Pathway Analysis

Computes pathway significance

Description

Performs a test for each pathway checking if the number of significant paths is significant, compared to not having any of the paths as significant.

Usage

top_pathways(comp)

Arguments

comp	Comparison data frame as returned by the do_wilcoxon function.

Value

Table with the names of the pathways and their p-value for the Fisher test comparing the proportion of significant subpaths vs. 0.

Examples

data(comp)
top_pathways(comp)

babelomics/hipathia documentation built on July 27, 2022, 2:23 p.m.