get_pathway_functions: Returns functions related to a pathway

In babelomics/hipathia: HiPathia: High-throughput Pathway Analysis

Returns functions related to a pathway

Description

Returns functions related to a pathway

Usage

get_pathway_functions(
  pathigraph,
  dbannot,
  entrez2hgnc,
  use_last_nodes = TRUE,
  unique = TRUE
)

Arguments

pathigraph	Pathway object
dbannot	Dataframe with the annotation of the genes to the functions. First column are gene symbols, second column the functions.
entrez2hgnc	Relation between Entrez and HGNC genes.
use_last_nodes	Boolean, whether to annotate functions to the last nodes of the pathways or not. If FALSE, functions will refer to all the nodes of the pathway.
unique	Boolean, whether to return the first function for each path.

Value

List of annotations from pathways to functions

babelomics/hipathia documentation built on July 27, 2022, 2:23 p.m.