IBDparameters: IBDparameters() calculates IBD probabilities then estimates...
In bahlolab/isoRelate: Identity-by-Descent Inference of Haploid Recombining Organisms
Description
Usage
Arguments
Value
Description
IBDparameters() calculates IBD probabilities then estimates the number of meiosis for an isolate pair.
Usage
1
IBDparameters(genotypes, pop_allele_freqs, gender_1, gender_2)
Arguments
genotypes
An integer matrix of genotype calls for a pair of isolates. Each coloumn represents and isolate and each row represents a SNP.
pop_allele_freqs
A numeric vector of population allele frequencies for each SNP.
gender_1
An integer denoting the MOI value of isoalte 1.
gender_2
An integer denoting the MOI value of isoalte 2.
Value
A vector of 4 values representing the number of meiosis and the probabilities of sharing 0, 1 and 2 alleles IBD respectively.
bahlolab/isoRelate documentation built on May 11, 2019, 5:25 p.m.
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Description Usage Arguments Value
Description
IBDparameters() calculates IBD probabilities then estimates the number of meiosis for an isolate pair.
Usage
1 | IBDparameters(genotypes, pop_allele_freqs, gender_1, gender_2)
|
Arguments
genotypes |
An integer matrix of genotype calls for a pair of isolates. Each coloumn represents and isolate and each row represents a SNP. |
pop_allele_freqs |
A numeric vector of population allele frequencies for each SNP. |
gender_1 |
An integer denoting the MOI value of isoalte 1. |
gender_2 |
An integer denoting the MOI value of isoalte 2. |
Value
A vector of 4 values representing the number of meiosis and the probabilities of sharing 0, 1 and 2 alleles IBD respectively.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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