my_ibd: IBD Segments For The Papua New Guinea Dataset

In bahlolab/isoRelate: Identity-by-Descent Inference of Haploid Recombining Organisms

Description

The IBD segments inferred using isoRelate with the parameter settings as in the Vignette.

Usage

my_ibd

Format

A data frame with

fid1

Family 1 ID

iid1

Isolate 1 ID

fid2

Family 2 ID

iid2

Isolate 2 ID

chr

Chromosome

start_snp

IBD segment start SNP ID

end_snp

IBD segment end SNP ID

start_position_bp

IBD segment start SNP base-pair position

end_position_bp

IBD segment end SNP base-pair position

start_position_M

IBD segment start SNP morgan position

end_position_M

IBD segment end SNP morgan position

number_snps

Number of SNPs in IBD segment

length_bp

Length of IBD segment in base-pairs

length_M

Length of IBD segment in morgans

ibd_status

The number of alleles shared IBD (either 1 or 2)

bahlolab/isoRelate documentation built on May 11, 2019, 5:25 p.m.